The Taxicab Sampler: MCMC for Discrete Spaces with Application to Tree Models
share
Motivated by the problem of exploring discrete but very complex state spaces in Bayesian models, we propose a novel Markov Chain Monte Carlo search algorithm: the taxicab sampler. We describe the construction of this sampler and discuss how its interpretation and usage differs from that of standard Metropolis-Hastings as well as the closely-related Hamming ball sampler. The proposed taxicab sampling algorithm is then shown to demonstrate substantial improvement in computation time relative to a naïve Metropolis-Hastings search in a motivating Bayesian regression tree count model, in which we leverage the discrete state space assumption to construct a novel likelihood function that allows for flexibly describing different mean-variance relationships while preserving parameter interpretability compared to existing likelihood functions for count data.
READ FULL TEXT